PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239552.1
Common NameICEa
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 541aa    MW: 58958 Da    PI: 5.3733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239552.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11356398754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  XP_008239552.1 356 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 398
                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16352418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9355398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.13E-13356402No hitNo description
Gene3DG3DSA:4.10.280.106.6E-16356411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048738.95E-7470530No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MLPRLNGAVW MGDREDRDSA SWNRTTAATT NNINCGVVES KDELGSLSTF KSMLDVDDDW  60
YLPNNSIQSH SDVRDIAFSP SFADPESLLL NPVDSSSSCS PSSSVFNNLD PNQVHYYLPQ  120
NSTLSSLLNV VPNNPLEHGF DLGCDIGFLD TQASSGSSLM NRGGGVLTGF SGLSSNNQMN  180
AQDLCSNLQY STTRLPQLLE NNSNFLGFRG FEDTSANALF PNRPKLLRPL DSVPDVGAPP  240
TLFQKRVQKN LADNGGNLGV LGSEGGLVLN HMEGVERKRE MGEENERKRK LSGGDDFEDV  300
SIDGSGLNYD SDDFTENTKM DDGAKNGGNS SNANSTVTGG GDHKGKKKGL PAKNLMAERR  360
RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ KINNLHNELE SIPPGSSLTP  420
TGSTFHPLTP TPATLPSRIK EELCPSSLPS PNGQPARVEV RLREGRAVNI HMFCGRRPGL  480
LLSTMRTLDS LGLDIQQAVI SCFNGFAMDI FRAEQCKEGQ DVHPDQIKAV LLESVGFHGL  540
I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345363KKKGLPAKNLMAERRRRKK
2357364ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894120.0KP689412.1 Prunus pseudocerasus isolate Unigene18982 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239552.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-133ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0S2CW820.0A0A0S2CW82_PRUMU; Inducer of CBF expression a
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-132bHLH family protein